Ina Sonnen

Ina Sonnen is a group leader at the Hubrecht Institute. Within the Beyond the Blastocyst consortium she investigates how signalling pathways and in particular signalling dynamics regulate early human development.

She obtained her PhD in 2012 from the University Basel, Switzerland, for her research in the lab of Erich Nigg at the Max Planck Institute of Biochemistry, Munich, and Biozentrum Basel. Combining cell biological and biochemical techniques with super-resolution microscopy she studied the structure and duplication of centrosomes during cell proliferation. She then performed postdoctoral work at the European Molecular Biology Laboratory (EMBL) in the groups of Alexander Aulehla (developmental biology) and Christoph Merten (microfluidics) to study how signalling pathways control periodic segmentation of the vertebrate embryo (somitogenesis). There she established a microfluidic system, which allows simultaneous perturbations of signalling pathways at high temporal precision with real-time imaging. She has used this to dissect the function of signalling oscillations during somitogenesis. With her own group at the Hubrecht Institute Ina combines these techniques with biochemical and single-cell techniques to study the function and mechanism of how signalling and signalling dynamics control both embryonic development and adult tissue homeostasis. In collaboration with other groups, she has established gastruloids as embryo-like model system of somitogenesis.

Relevant publications

  • Sabine L. Bosman and Katharina F. Sonnen*: Signalling oscillations in embryonic development. Book chapter in Current topics in developmental biology 149 (2022)
  • Sonja D.C. Weterings, Marek J. van Oostrom and Katharina F. Sonnen*: Building bridges between fields: bringing together development and homeostasis. Development 148 (2021)
  • Ananya Gupta, Matthias P. Lutolf*, Alex J. Hughes* and Katharina F. Sonnen*: Bioengineering in vitro models of embryonic development. Stem Cell Reports 16 (2021)
  • Marek J. Oostrom, Wilke H.M. Meijer and Katharina F. Sonnen*: A microfluidics approach for the functional investigation of signalling oscillations governing somitogenesis. Journal of Visualized Experiments (2021)
  • Yasmine el Azhar and Katharina F. Sonnen*: Development in a dish – in vitro models of mammalian embryonic development. Frontiers in Cell and Developmental Biology (2021)
  • Susanne C. van den Brink, Anna Alemany, Vincent van Batenburg, Naomi Moris, Marloes Blotenburg, Judith Vivié, Peter Baillie-Johnson, Jennifer Nichols, Katharina F. Sonnen, Alfonso Martinez Arias and Alexander van Oudenaarden*: Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids. Nature (2020 Feb 19)
  • Vincent van Batenburg, Susanne C. van den Brink, Marloes Blotenburg, Anna Alemany, Naomi Moris, Peter Baillie-Johnson, Yasmine el Azhar, Katharina F. Sonnen, Alfonso Martinez Arias and Alexander van Oudenaarden*: Generating gastruloids with somite-like structures from mouse embryonic stem cells. Nature Protocol Exchange (2020 Feb 19)
  • Katharina F. Sonnen and Christoph A. Merten*: Microfluidics as an emerging precision tool in developmental biology. Developmental Cell, 48 (2019)
  • Katharina F. Sonnen, Volker Lauschke, Julia Uraji, Henning J. Falk, Yvonne Petersen, Maja C. Funk, Mathias Beaupeux, Paul François, Christoph A. Merten and Alexander Aulehla*: Modulation of phase-shift between Wnt- and Notch-signaling oscillations controls mesoderm segmentation. Cell, 172 (2018)